dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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cannot open the connection #141

Open mavino opened 1 year ago

mavino commented 1 year ago

Running

model <- infer_trajectory(dataset, methods_selected[1], verbose = T)

I got the following error:

v0.9.9.05: Pulling from dynverse/ti_paga
6f2f362378c5: Already exists
23028c55282c: Already exists
d0356fc9da6d: Already exists
e67c3352be2f: Already exists
11a33a33bcd9: Already exists
99cedbd08ad3: Already exists
32ac39911b07: Already exists
690f37b4f11b: Already exists
3dd4d7c3fbf7: Already exists
e61ed39364c4: Already exists
5cc62a86e7e3: Already exists
b905a92924b6: Already exists
19f3e7edf6c6: Already exists
c2fe14888f44: Already exists
ee1c365fb2b7: Already exists
f36370b85e60: Already exists
55178b261b7d: Already exists
c330d18bed49: Already exists
fbce06413c54: Already exists
9f2d3e2f067d: Pulling fs layer
ce9a3ee5aa25: Pulling fs layer
2c30121d079d: Pulling fs layer
6160ed31499b: Pulling fs layer
d50542ecb400: Pulling fs layer
6160ed31499b: Waiting
d50542ecb400: Waiting
9f2d3e2f067d: Verifying Checksum
9f2d3e2f067d: Pull complete
6160ed31499b: Verifying Checksum
6160ed31499b: Download complete
d50542ecb400: Download complete
2c30121d079d: Verifying Checksum
2c30121d079d: Download complete
ce9a3ee5aa25: Verifying Checksum
ce9a3ee5aa25: Download complete
ce9a3ee5aa25: Pull complete
2c30121d079d: Pull complete
6160ed31499b: Pull complete
d50542ecb400: Pull complete
Digest: sha256:80643e1d7e7dd21e377d93357aa2727581ac6376c46e1586b517f78888cbd514
Status: Downloaded newer image for dynverse/ti_paga:v0.9.9.05
docker.io/dynverse/ti_paga:v0.9.9.05
Error in `map()`:
ℹ In index: 1.
Caused by error in `file()`:
! cannot open the connection
Run `rlang::last_trace()` to see where the error occurred.
Warning message:
In file(con, "r") :
  cannot open file '/tmp/RtmpO3zeVt/file13638bd4fcc//tmpfile': No such file or directory
AlongLin commented 1 year ago

Same issue for me.

Error in map(): ℹ In index: 1. Caused by error in file(): ! cannot open the connection Run rlang::last_trace() to see where the error occurred. Warning message: In file(con, "r") : cannot open file '/tmp/Rtmpw32cQn/fileae0ce213a07cc//tmpfile': No such file or directory

Xyihang commented 6 months ago

same to me , is any one know how to solve it?

model <- infer_trajectory(dataset, "angle") Error in map(): ℹ In index: 1. Caused by error in file(): ! cannot open the connection Run rlang::last_trace() to see where the error occurred. Warning message: In file(con, "r") : cannot open file '/tmp/RtmpvGLx6J/file2f92644c113//tmpfile': No such file or directory

mavino commented 6 months ago

This is crazy how many people have this problem and one address it... the craziest part is that my ubuntu desktop computer has this problem while my ubuntu laptop does not have it...

Xyihang commented 6 months ago

"When I directly use the dyno algorithm on my server, there is no error. However, when I wrap the dyno algorithm in my Docker image, I encounter this error. I wonder if you have experienced a similar situation?"