cannot open URL error during Installation

MJ-Yang commented 5 years ago

Hi, I am trying to install dyno and, I've installed most of the dependencies.

However, suddenly the command

devtools::install_github("dynverse/dyno")

throws error as below, Error in utils::download.file(url, path, method = download_method(), quiet = quiet, : cannot open URL 'https://api.github.com/repos/dynverse/dyno/contents/DESCRIPTION?ref=master'

Can you help me with this problem?

rcannood commented 5 years ago

Hello @MJ-Yang,

That's strange, this command works fine for me. Maybe it was a temporary problem with the internet connection or github. Could you try again and let me know if the problem persists?

Kind regards, Robrecht

> devtools::install_github("dynverse/dyno")
Downloading GitHub repo dynverse/dyno@master
✔  checking for file ‘/tmp/RtmpBd5mCI/remotesf943ed77cb8/dynverse-dyno-707c424/DESCRIPTION’ ...
─  preparing ‘dyno’:
✔  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘dyno_0.1.0.tar.gz’ (575ms)

Installing package into ‘/home/rcannood/R/x86_64-redhat-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
* installing *source* package ‘dyno’ ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘dyno’
    finding HTML links ... done
    dyno                                    html  
    fibroblast_reprogramming_treutlein      html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dyno)
Adding ‘dyno_0.1.0_R_x86_64-redhat-linux-gnu.tar.gz’ to the cache

zouter commented 5 years ago

Closing the issue due to inactivity. Feel free to reopen

dynverse / dyno

cannot open URL error during Installation #35