installation issue for course

[abotzki]

Hi, When trying to install dyno on our servers for the single cell training I get this issue: Cheers, Alex

library("devtools") devtools::install_github("dynverse/dyno") Skipping install of 'dyno' from a github remote, the SHA1 (707c4245) has not changed since last install. Use force = TRUE to force installation devtools::install_github("dynverse/dyno", force=TRUE) Downloading GitHub repo dynverse/dyno@master checking for file \u2018/tmp/RtmpOAdEih/remotes17e265c31f69/dynverse-dyno-707c424/DESCRIPTION\u2019 ..\u2714 checking for file \u2018/tmp/RtmpOAdEih/remotes17e265c31f69/dynverse-dyno-707c424/DESCRIPTION\u2019 \u2500 preparing \u2018dyno\u2019: \u2714 checking DESCRIPTION meta-information ... \u2500 checking for LF line-endings in source and make files and shell scripts \u2500 checking for empty or unneeded directories \u2500 looking to see if a \u2018data/datalist\u2019 file should be added \u2500 building \u2018dyno_0.1.0.tar.gz\u2019 (1.2s)

Installing package into \u2018/home/VIBTraining1/R/x86_64-pc-linux-gnu-library/3.5\u2019 (as \u2018lib\u2019 is unspecified)

• installing source package \u2018dyno\u2019 ... R data * moving datasets to lazyload DB byte-compile and prepare package for lazy loading Error: package or namespace load failed for \u2018dynfeature\u2019: object \u2018safe_tempdir\u2019 is not exported by 'namespace:dynutils' Error : package \u2018dynfeature\u2019 could not be loaded ERROR: lazy loading failed for package \u2018dyno\u2019
• removing \u2018/home/VIBTraining1/R/x86_64-pc-linux-gnu-library/3.5/dyno\u2019 Error in i.p(...) : (converted from warning) installation of package \u2018/tmp/RtmpOAdEih/file17e2110c1204/dyno_0.1.0.tar.gz\u2019 had non-zero exit status

sessionInfo() R version 3.5.2 (2018-12-20) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.1 LTS

Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C LC_TIME=C.UTF-8
[4] LC_COLLATE=C.UTF-8 LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8
[7] LC_PAPER=C.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] Rcpp_1.0.0 plyr_1.8.4 pillar_1.3.1 compiler_3.5.2
[5] bindr_0.1.1 prettyunits_1.0.2 remotes_2.0.2 tools_3.5.2
[9] testthat_2.0.1 digest_0.6.18 pkgbuild_1.0.2 pkgload_1.0.2
[13] gtable_0.2.0 memoise_1.1.0 tibble_2.0.1 pkgconfig_2.0.2
[17] rlang_0.3.1 cli_1.0.1 rstudioapi_0.9.0 patchwork_0.0.1
[21] yaml_2.2.0 bindrcpp_0.2.2 withr_2.1.2 dplyr_0.7.8
[25] stringr_1.3.1 hms_0.4.2 fs_1.2.6 desc_1.2.0
[29] dynutils_1.0.0 devtools_2.0.1 grid_3.5.2 rprojroot_1.3-2
[33] tidyselect_0.2.5 glue_1.3.0 R6_2.3.0 processx_3.2.1
[37] sessioninfo_1.1.1 ggplot2_3.1.0 readr_1.3.1 tidyr_0.8.2
[41] purrr_0.3.0 callr_3.1.1 magrittr_1.5 scales_1.0.0
[45] usethis_1.4.0 backports_1.1.3 ps_1.3.0 dyndimred_0.1.0
[49] assertthat_0.2.0 colorspace_1.4-0 stringi_1.2.4 lazyeval_0.2.1
[53] munsell_0.5.0 crayon_1.3.4

[rcannood]

Hi Alex,

I'm terribly sorry for not responding earlier, I thought I did. This problem should have been fixed with the latest version of dyno, could you reinstall and try again?

Robrecht

[rcannood]

This problem should have been fixed, closing this issue.