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dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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Error: 'manhattan_distance' is not an exported object from 'namespace:dynutils' #50

Closed elimereu closed 5 years ago

elimereu commented 5 years ago

Hi, thank you for this amazing package and study! I would like to use your package for my analysis, so I'm testing it. I get this error when I try to make the plot with the following commands:

plot_dimred( model, expression_source = dataset$expression, color_cells = "feature", feature_oi = "Vim", color_density = "grouping", grouping = fibroblast_reprogramming_treutlein$grouping, label_milestones = FALSE )

Any help for this? Thanks!

zouter commented 5 years ago

Hi @elimereu

Sorry for this, I found the solution but don't have time now to finalise the fix now. I will try to fix this tomorrow morning.

elimereu commented 5 years ago

Thanks!! 😊

Il giorno 3 mag 2019, alle ore 16:26, Wouter Saelens notifications@github.com ha scritto:

Hi @elimereu

Sorry for this, I found the solution but don't have time now to finalise the fix now. I will try to fix this tomorrow morning.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

zouter commented 5 years ago

Hi! This should be fixed if you do devtools::install_github("dynverse/dynwrap@master")

elimereu commented 5 years ago

Thanks a lot! All plots are now working but heatmaps. I don’t know why but when I run
like in the tutorial the command runs and without errors but there is no plot as output. Any explanation for this?

Thanks,

Elisabetta

On 05 May 2019, at 07:12, Wouter Saelens notifications@github.com wrote:

Hi! This should be fixed if you do devtools::install_github("dynverse/dynwrap@master")

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/dynverse/dyno/issues/50#issuecomment-489390843, or mute the thread https://github.com/notifications/unsubscribe-auth/AE5OXS4UNTWOJQ7TZE5HW5DPTZUFLANCNFSM4HKS76PA.

zouter commented 5 years ago

This is a bug somewhere in the patchwork package. The heatmap should show if you press zoom in :wink: .

rcannood commented 5 years ago

Closing this issue since it has been fixed.