dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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Error: \docker.exe: Error response from daemon: invalid mode: /copy_mount. See '\docker.exe run --help'. #65

Open jliu678 opened 4 years ago

jliu678 commented 4 years ago

Hi,

I am just trying the example dataset included in the dyno package like the below

model <- infer_trajectory(dataset, ti_paga())

it turns out Error: \DOCKER~1\docker.exe: Error response from daemon: invalid mode: /copy_mount. See '\DOCKER~1\docker.exe run --help'.

Docker quickest terminal said installation is successful upon testing the "docker hello world" .

thanks

superwang2018 commented 4 years ago

Same issue!

dynwrap::test_docker_installation(detailed = TRUE) <U+2714> Docker is installed <U+2714> Docker daemon is running <U+2714> Docker is at correct version (>1.0): 1.37 <U+2714> Docker is in linux mode <U+2714> Docker can pull images <U+2714> Docker can run image docker: Error response from daemon: invalid mode: /mount. See 'docker run --help'. Error in dynwrap::test_docker_installation(detailed = TRUE) : <U+274C> Unable to mount temporary directory: C:\Users\52854\AppData\Local\Temp\Rtmpui3nLo\file294862a940f8. On windows, you need to enable the shared drives (https://rominirani.com/docker-on-windows-mounting-host-directories-d96f3f056a2c)

sessionInfo() R version 3.6.2 (2019-12-12) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale: [1] LC_COLLATE=Chinese (Simplified)_China.936 LC_CTYPE=Chinese (Simplified)_China.936
[3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.936

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] Rcpp_1.0.3 lattice_0.20-38 tidyr_1.0.2 png_0.1-7 ps_1.3.0
[6] assertthat_0.2.1 digest_0.6.23 R6_2.4.1 plyr_1.8.5 backports_1.1.5
[11] acepack_1.4.1 dynparam_1.0.0 ggplot2_3.2.1 pillar_1.4.3 rlang_0.4.2
[16] lazyeval_0.2.2 rstudioapi_0.10 data.table_1.12.8 rpart_4.1-15 Matrix_1.2-18
[21] checkmate_1.9.4 splines_3.6.2 readr_1.3.1 stringr_1.4.0 foreign_0.8-72
[26] htmlwidgets_1.5.1 igraph_1.2.4.2 munsell_0.5.0 compiler_3.6.2 carrier_0.1.0
[31] xfun_0.12 pkgconfig_2.0.3 base64enc_0.1-3 htmltools_0.4.0 nnet_7.3-12
[36] tidyselect_0.2.5 tibble_2.1.3 gridExtra_2.3 htmlTable_1.13.3 Hmisc_4.3-0
[41] crayon_1.3.4 dplyr_0.8.3 grid_3.6.2 gtable_0.3.0 lifecycle_0.1.0
[46] magrittr_1.5 scales_1.1.0 RcppParallel_4.4.4 stringi_1.4.4 reshape2_1.4.3
[51] remotes_2.1.1 testthat_2.3.1 dynwrap_1.1.4 latticeExtra_0.6-29 vctrs_0.2.2
[56] Formula_1.2-3 RColorBrewer_1.1-2 tools_3.6.2 glue_1.3.1 purrr_0.3.3
[61] hms_0.5.3 proxyC_0.1.5 jpeg_0.1-8.1 yaml_2.2.0 processx_3.4.1
[66] survival_3.1-8 babelwhale_1.0.1 colorspace_1.4-1 cluster_2.1.0 dynutils_1.0.4
[71] knitr_1.27