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dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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singularity run image from singularity hub #74

Closed seqyuan closed 4 years ago

seqyuan commented 4 years ago

since I have succed singularity pull shub://dynverse/ti_slingshot:latest, but when I run model <- infer_trajectory(dataset, "slingshot"), it showed me Running singularity exec 'docker://dynverse/ti_slingshot:v1.0.3' echo hi.

what should I do to set singularity run image from shub://dynverse/

zouter commented 4 years ago

We are no longer using the singularity images from singularity hub as these are outdated (and singularity hub might cease to exist one day). The images from dockerhub are the latest version, and the singularity exec 'docker://dynverse/ti_slingshot:v1.0.3' echo hi command will create the latest singularity image from the docker image.

Why is it necessary for you to run the method using singularity hub?

rcannood commented 4 years ago

Closing this issue. Feel free to reply if further input is needed.