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dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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How to used the ti_methods locally to speed up the infer_trajectory() #76

Open pangxueyu233 opened 4 years ago

pangxueyu233 commented 4 years ago

Hi, it's an impressive tool to help us find an appropriate trajectory inference method in single cell data. But recently, I got tough in using infer_trajectory . I found it will spend a lot of time downloading the methods_selected called in guidelines_shiny(datasets_dyn) which echo 

model_slingshot <- infer_trajectory(datasets_dyn, methods_selected[1])

v1.0.3: Pulling from dynverse/ti_slingshot
a4d8138d0f6b: Pulling fs layer
fb232e1cbf74: Pulling fs layer
53a696448921: Pulling fs layer
0a98bf8e346b: Pulling fs layer
80070ed7cf88: Pulling fs layer
3dda0c19343b: Pulling fs layer
c8dedce96c17: Pulling fs layer
33199d4ff47f: Pulling fs layer
7d44151ac2da: Pulling fs layer
71c13904cc33: Pulling fs layer
a03a650d0366: Pulling fs layer
d0e24af2427d: Pulling fs layer
509c796290f5: Pulling fs layer
fc7b41c3606c: Pulling fs layer
a0885e753793: Pulling fs layer
509c796290f5: Waiting
a0885e753793: Waiting
a03a650d0366: Waiting
71c13904cc33: Waiting
fc7b41c3606c: Waiting
d0e24af2427d: Waiting
0a98bf8e346b: Waiting
c8dedce96c17: Waiting
3dda0c19343b: Waiting
a4d8138d0f6b: Verifying Checksum
a4d8138d0f6b: Download complete
a4d8138d0f6b: Pull complete
80070ed7cf88: Verifying Checksum
80070ed7cf88: Download complete
3dda0c19343b: Verifying Checksum
3dda0c19343b: Download complete
c8dedce96c17: Verifying Checksum
c8dedce96c17: Download complete

Can you show me how to used your methods locally to save the downloading time ?

Thanks a lot!