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dynverse / dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
https://dynverse.github.io/dyno
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Is there a list of the newest version of each TI method? #93

Closed wendelljpereira closed 3 years ago

wendelljpereira commented 3 years ago

Hello,

Thank you very much for developing all the packages that are part of dynverse. It is a great tool!

I am trying to use some different models in my dataset. I started with slingshot and realize it was an older version. Then, I noticed the issue #91 and learned how to update this model to v.2:

create_ti_method_container("dynverse/ti_slingshot:v2.0.1")

How do I know if the version of a module is the most updated one? Is there a list of versions available as a docker container?

For example, I want to run PAGA and PAGA tree, but I would like to confirm that I have the newest version available.

Cheers, Wendell

rcannood commented 3 years ago

Hello Wendell,

If you want to use the latest version, you should run docker pull dynverse/ti_slingshot:latest in the terminal and then use create_ti_method_container("dynverse/ti_slingshot:latest") in R.

dynmethods should always be using the latest stable version of each package. I should update dynmethods soon to reflect this, then you wouldn't encounter this issue anymore.

Kind regards, Robrecht

wendelljpereira commented 3 years ago

Hi Robrecht,

Thank you very much for the information!

Cheers, Wendell