dynverse / dynwrap

A common data format and inference environment for single-cell trajectories 📦
https://dynverse.org
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Preparation for dynwrap v1.0.0 #118

Closed rcannood closed 5 years ago

rcannood commented 5 years ago

Big overhaul of how TI methods are wrapped, @zouter is writing documentation

zouter commented 5 years ago

This fixes #74

rcannood commented 5 years ago

This fixes #74

Amongst others.

codecov[bot] commented 5 years ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (devel@3704da7). Click here to learn what that means. The diff coverage is 83.64%.

Impacted file tree graph

@@           Coverage Diff            @@
##             devel     #118   +/-   ##
========================================
  Coverage         ?   88.63%           
========================================
  Files            ?       44           
  Lines            ?     2428           
  Branches         ?        0           
========================================
  Hits             ?     2152           
  Misses           ?      276           
  Partials         ?        0
Impacted Files Coverage Δ
R/method_create_ti_method_definition.R 0% <0%> (ø)
R/wrap_add_root.R 86.27% <0%> (ø)
R/wrap_add_branch_trajectory.R 100% <100%> (ø)
R/method_infer_trajectory.R 84.81% <100%> (ø)
R/wrap_gather_cells_at_milestones.R 100% <100%> (ø)
R/wrap_output_list.R 77.77% <100%> (ø)
R/wrap_add_dimred_projection.R 90.69% <100%> (ø)
R/wrap_add_prior_information.R 88.88% <100%> (ø)
R/container_get_definition.R 100% <100%> (ø)
R/wrap_add_trajectory.R 96% <100%> (ø)
... and 10 more

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 3704da7...5d1d137. Read the comment docs.

codecov[bot] commented 5 years ago

Codecov Report

:exclamation: No coverage uploaded for pull request base (devel@3704da7). Click here to learn what that means. The diff coverage is 83.64%.

Impacted file tree graph

@@           Coverage Diff            @@
##             devel     #118   +/-   ##
========================================
  Coverage         ?   88.63%           
========================================
  Files            ?       44           
  Lines            ?     2428           
  Branches         ?        0           
========================================
  Hits             ?     2152           
  Misses           ?      276           
  Partials         ?        0
Impacted Files Coverage Δ
R/method_create_ti_method_definition.R 0% <0%> (ø)
R/wrap_add_root.R 86.27% <0%> (ø)
R/wrap_add_branch_trajectory.R 100% <100%> (ø)
R/method_infer_trajectory.R 84.81% <100%> (ø)
R/wrap_gather_cells_at_milestones.R 100% <100%> (ø)
R/wrap_output_list.R 77.77% <100%> (ø)
R/wrap_add_dimred_projection.R 90.69% <100%> (ø)
R/wrap_add_prior_information.R 88.88% <100%> (ø)
R/container_get_definition.R 100% <100%> (ø)
R/wrap_add_trajectory.R 96% <100%> (ø)
... and 10 more

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 3704da7...5d1d137. Read the comment docs.