FUNCTIONALITY: Improved RNA velocity handling. Not all features need to be present
in the projected expression, allowing integration with standard velocyto.R pipelines.
BUG FIX calculate_pseudotime(): Fix pseudotime calculation on branching trajectories (#139).
BUG FIX flip_edges(): Also flip dimred_segment_progressions if available.
BUG FIX add_root(): Fix rooting for some linear trajectories (#149)
SMALL CHANGE: Allow a named vector for groups_id prior information (#154)
SMALL CHANGE: Moved orient_topology_to_velocity() to scvelo R package.
BUG FIX simplify_trajectory(): handle dimred_milestones and dimred_segments values (#153).
BUG FIX add_dimred(): Do not execute example of dyndimred if is not installed.
FUNCTIONALITY: Improved RNA velocity handling. Not all features need to be present in the projected expression, allowing integration with standard velocyto.R pipelines.
BUG FIX
calculate_pseudotime(): Fix pseudotime calculation on branching trajectories (#139).BUG FIX
flip_edges(): Also flipdimred_segment_progressionsif available.BUG FIX
add_root(): Fix rooting for some linear trajectories (#149)SMALL CHANGE: Allow a named vector for groups_id prior information (#154)
SMALL CHANGE: Moved
orient_topology_to_velocity()to scvelo R package.BUG FIX
simplify_trajectory(): handle dimred_milestones and dimred_segments values (#153).BUG FIX
add_dimred(): Do not execute example of dyndimred if is not installed.