Closed Kenkeni-ZJU closed 7 months ago
Hi Kankan,
The ViralCC software serves as a binning tool for viral contigs. To replicate the results regarding virus-host interactions presented in our paper, you'll then need to bin non-viral contigs using your preferred binning tools and generate the raw Hi-C contact matrix for all contigs including viral and non-viral contigs (tools like NormCC can facilitate this process).
Utilizing both the raw Hi-C contact matrix and the identified viral as well as non-viral bins, you can then discern the viral-host pairs.
Best
Thank you!
Hi Yuxuan,
I am trying to retrieve virus-host pairs with ViralCC since it seems that I can do this (according to your paper). However, there is no such information in the output files. Can I achieve this goal directly with ViralCC?
Thanks, Kankan