dzerbino oases issues - Githubissues

dzerbino / oases

De novo transcriptome assembler for short reads

www.ebi.ac.uk/~zerbino/oases/

GNU General Public License v3.0

62 stars 9 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Velveth: does not seem to be in fastA format

#22 shankar2318 closed 3 years ago
1
velvetg parameter

#21 Morteza-A opened 4 years ago
0
Missing documentation of `-ins_length` in oases help message

#20 winni2k opened 5 years ago
0
Definition of -ins_length2 option

#19 winni2k closed 5 years ago
1
oases_pipeline.py identation error

#18 elainfl closed 5 years ago
6
Loss of strand-specificity

#17 jrodnz closed 6 years ago
2
Word length 83 greater than max allowed value (64)

#16 haidudu opened 6 years ago
1
Behavior of oases with duplicate removal

#15 winni2k closed 6 years ago
2
Documentation clarification

#14 winni2k closed 6 years ago
2
update oases_pipeline.py demo for velvet 1.2.10

#13 dongzhuoer closed 6 years ago
1
velvetg trying to allocate more than 2 PB of RAM!

#12 cladobranch opened 7 years ago
11
oasis-velvet crashing with glibc error

#11 nickschurch opened 7 years ago
2
AssertionError: Oases failed at k = 25

#10 Peajee closed 8 years ago
6
Oases output depends on the order of the sequences to assemble in the input

#9 drosofff opened 8 years ago
0
glibc detected *** oases: double free or corruption (!prev)

#8 msbanos closed 8 years ago
7
oases pipeline with qsub.

#7 apallav opened 9 years ago
0
Add velvet repository as a sub-module

#6 tseemann closed 9 years ago
2
oases_pipeline.py: incorrect range in singleKAssemblies

#5 sammyjava closed 9 years ago
2
Typo in manual "-merge" => "-merge yes"

#4 tseemann closed 10 years ago
1
Slow merge

#3 dzerbino closed 7 years ago
3
Bug in AMOS output

#2 dzerbino closed 7 years ago
2
segfaults at free() in Oases in merge mode

#1 mhowison closed 12 years ago
1