search

e-bel / ebel

Software package for parsing and validating Biological Expresison Language files as well as constructing and enriching knowledge graphs in the OrientDB environment.
MIT License
6 stars 1 forks source link

IUPHAR import fails #15

Closed cebel closed 1 year ago

cebel commented 1 year ago

File "/usr/local/lib/python3.9/site-packages/ebel/manager/orientdb/biodbs/iuphar.py", line 66, in insert_ligand_data df.to_sql(iuphar.IupharLigand.tablename, self.engine, if_exists='append')

pymysql.err.DataError: (1366, "Incorrect integer value: 'ENSG00000125657' for column 'ensembl_id' at row 219")

brucetony commented 1 year ago

Simple change to string in the models and works now