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eMetaboHUB / MS-CleanR

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error in rowmeans #10

Closed Phylloxera closed 1 year ago

Phylloxera commented 2 years ago

Hi,

I think I have a similar issue to #1 Do you have any guidance on which filter(s) to try singly to see if any features remain after cleaning?

Thanks!

guikool commented 2 years ago
  1. Check if your data have MS/MS since all feature without MS/MS are discarded
  2. Don't forget to tick some adducts behind M-H and M+H in MSdial adduct tab, since if this is the only adduct detected, it may conduct to an error.
  3. Check your data arrangement: discard "-" for instance in sample or class naming. Same sample and order should be respected if you perform pos and neg mode
guikool commented 2 years ago

We also noticed an issue with RSD filter in some cases Try to untick rsd filter and rerun the filtering process