md5sum check to eQTL data downloaded from `ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/`

[Shicheng-Guo]

I have downloaded all the all.tsv.gz from ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/, for example:

Is there any md5sum files can be used to check the integrity of the files:

Thanks.

ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Lepik_2017/tx/Lepik_2017_tx_blood.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Lepik_2017/txrev/Lepik_2017_txrev_blood.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Naranbhai_2015/microarray/Naranbhai_2015_microarray_neutrophil_CD16.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/ge/Nedelec_2016_ge_macrophage_Listeria.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/exon/Nedelec_2016_exon_macrophage_Listeria.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/tx/Nedelec_2016_tx_macrophage_Listeria.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/txrev/Nedelec_2016_txrev_macrophage_Listeria.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/ge/Nedelec_2016_ge_macrophage_naive.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/exon/Nedelec_2016_exon_macrophage_naive.all.tsv.gz
ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/Nedelec_2016/tx/Nedelec_2016_tx_macrophage_naive.all.tsv.gz

[kauralasoo]

Thanks for pointing this out! The md5sum files are currently not on the FTP server, but we will try to add them in the next release.

[git-jemiller]

I haven't found a master-list but in each study you can find md5sum checks. For instance in GTEX v8 you can download the list of md5sum using:

wget "ftp://ftp.ebi.ac.uk/pub/databases/spot/eQTL/csv/GTEx_V8/ge/md5sum.txt"

[kauralasoo]

Thanks, Jason!

Yes, we added the md5sum files a while back, but forgot to reply this issues.