Nextflow pipeline for transforming data into HDF5

[jdhayhurst]

input: dir of TSV files

output: dir of HDF5 files

process:

• each TSV is labelled with an ID: .tsv.gz
• each TSV is converted to HDF5: .h5 using the converter https://github.com/eQTL-Catalogue/eQTL-SumStats/blob/dev/sumstats/api_v2/cli/main.py

[jdhayhurst]

written pipeline: https://github.com/eQTL-Catalogue/eQTL-SumStats/blob/dev/sumstats/api_v2/workflows/tsv2hdf.nf testing...