Closed yangchuhua closed 3 years ago
Hi Chuhua,
I think you have a small typo in your command. The name of the parameter should be --readPathsFile, not --readPathFile.
We have some more instructions here: https://github.com/eQTL-Catalogue/eQTL-Catalogue-resources/blob/master/tutorials/workflow_execution.md
Best, Kaur
Hi Chuhua,
I think you have a small typo in your command. The name of the parameter should be --readPathsFile, not --readPathFile.
We have some more instructions here: https://github.com/eQTL-Catalogue/eQTL-Catalogue-resources/blob/master/tutorials/workflow_execution.md
Best, Kaur
Hi Kaur,
Thank you very, very much! It really was a typo.
Thank you for sharing the link. It was very helpful!
Best, Chuhua
To Whom It May Concern:
your pipeline is awesome. Thanks for all your effort in this job.
When I ran pipeline by the following commands I got the error report that "No such variable: readPaths--- Check script 'main.nf' at line: 267 or see '.nextflow.log' file for more details " $ /raid3/homedirs/yang/software/nextflow run /raid3/homedirs/yang/software/rnaseq/main.nf \
N E X T F L O W ~ version 21.04.3 Launching
../rnaseq/main.nf
[prickly_hamilton] - revision: 4e88dccf0e No such variable: readPaths -- Check script 'main.nf' at line: 267 or see '.nextflow.log' file for more detailsI wonder if the "readPaths" is the parameter "--reads" in your main.nf.
Best, Chuhua