Open douglowe opened 4 months ago
Workflow Run RO-Crate (RO-Crate profiles to capture the provenance of workflow runs): https://www.researchobject.org/workflow-run-crate/
Working issue on development repository: https://github.com/UoMResearchIT/ro-crate_snakemake_tooling/issues/1
Change of plan - probably better to create test rocrate within snakemake source repo, and follow TTD principles to integrate this into snakemake.
See issue: https://github.com/eScienceLab/snakemake/issues/1
@douglowe and @alexhambley to work on definition of contents of the RO-Crates required from this tool
@douglowe to discuss with Tim Booth. keep up to date with Felix. @douglowe keeping more of an oversight in sprint 3. May be relevant for @alexhambley to include for Snakemake aspects in HDR UK.
Following discussion with Tim Booth - we are intending to open a discussion with Snakemake developers in a Discussions channel in their GH organisation. Waiting for lead developer to return to do this (week starting 12th August).
Work coming from the BGE hackathon in Leiden. Reporting of products made should go in the report here: https://docs.google.com/document/d/1if6ukMKN3xHQHAwGEQPhhgvp7iQcFnauj4W1ZtIs8wk/edit
Aim is to write a python tool which will create a workflow RO-Crate from the outputs and reports created from a snakemake workflow.
Snakemake workflow used: https://github.com/o-william-white/skim2mt.git Working code and example inputs: https://github.com/UoMResearchIT/ro-crate_snakemake_tooling