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eWaterCycle / infra

Instructions for system administrators to deploy the eWaterCycle platform
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nbgitpuller links give 500 internal server error #118

Open sverhoeven opened 2 years ago

sverhoeven commented 2 years ago

In logs it says:

Jan 06 15:20:45 host-192-168-2-181 bash[41746]: SingleUserLabApp - ERROR - Uncaught exception GET /jupyter/user/sverhoeven/git-pull?repo=https%3A%2F%2Fgithub.com%2FeWaterCycle%2FtechnicalPaperExampleNotebooks>
Jan 06 15:20:45 host-192-168-2-181 bash[41746]: HTTPServerRequest(protocol='http', host='techpaperdemo.ewatercycle-nle.src.surf-hosted.nl', method='GET', uri='/jupyter/user/sverhoeven/git-pull?repo=https%3A%2>
Jan 06 15:20:45 host-192-168-2-181 bash[41746]: Traceback (most recent call last):
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/tornado/web.py", line 1704, in _execute
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     result = await result
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/tornado/gen.py", line 216, in wrapper
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     result = ctx_run(func, *args, **kwargs)
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/nbgitpuller/handlers.py", line 175, in get
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     self.render_template(
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/notebook/base/handlers.py", line 515, in render_template
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     template = self.get_template(name)
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/nbclassic/nbserver.py", line 140, in get_template
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     return self.settings['notebook_jinja2_env'].get_template(name)
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/jinja2/environment.py", line 997, in get_template
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     return self._load_template(name, globals)
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/jinja2/environment.py", line 958, in _load_template
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     template = self.loader.load(self, name, self.make_globals(globals))
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/jinja2/loaders.py", line 125, in load
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     source, filename, uptodate = self.get_source(environment, name)
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:   File "/opt/conda/envs/ewatercycle/lib/python3.9/site-packages/jinja2/loaders.py", line 214, in get_source
Jan 06 15:20:45 host-192-168-2-181 bash[41746]:     raise TemplateNotFound(template)
Jan 06 15:20:45 host-192-168-2-181 bash[41746]: jinja2.exceptions.TemplateNotFound: status.html
sverhoeven commented 2 years ago

Did manual workaround listed at https://github.com/jupyterhub/nbgitpuller/issues/235:

# as root
cp /opt/conda/envs/ewatercycle/lib/python3.9/site-packages/nbgitpuller/templates/status.html /opt/conda/envs/ewatercycle/lib/python3.9/site-packages/notebook/templates/status.html