Wflow.jl fix: pin packages depending on netcdf/h5 binaries

[sverhoeven]

I was able to reproduce error with:

rm -rf ~/.julia
cp -r /mnt/data/parameter-sets/wflow_humber ./
ipython
from pathlib import Path
from ewatercycle_wflowjl.model import WflowJl, install_
from ewatercycle.base.parameter_set import ParameterSet

parameters_humber = ParameterSet(
    name="humber",
    directory=Path("/home/sverhoeven/wflow_humber"),
    target_model="WflowJl",
    config="wflow_sbm.toml"   
)
model = WflowJl(
    parameter_set=parameters_humber,
)
cfg_file,_ = model.setup()
model.initialize(cfg_file)
[ Info: Initialize model variables for model type `sbm`.
[ Info: Cyclic parameters are provided by `/home/sverhoeven/wflow_humber/staticmaps.nc`.
[ Info: Forcing parameters are provided by `/home/sverhoeven/wflow_humber/inmaps-era5-2013_xaver.nc`.
/opt/conda/envs/ewatercycle/bin/python3.10: symbol lookup error: /home/sverhoeven/.julia/artifacts/87831472e1d79c45830c3d71850680eb745345fb/lib/libnetcdf.so: undefined symbol: H5Pset_all_coll_metadata_ops

Weirdly running without ewc/bmi works

from juliacall import Main
Main.Pkg.add(name="Wflow", rev="BMI")
Main.seval('using Wflow')
Main.seval('Wflow.run("wflow_sbm.toml")')

[BSchilperoort]

Weirdly running without ewc/bmi works

I suspect importing packages that depend on netcdf/hdf5 binaries adds these binaries PATH somehow. And then Julia uses the same environmental variables which are "polluted" by the ones from Python.

[sverhoeven]

No longer able to reproduce error on one of the src machines.