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earmingol
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cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
BSD 3-Clause "New" or "Revised" License
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module 'seaborn.categorical' has no attribute '_BoxPlotter'
#63
LJZYaaa
opened
1 month ago
2
cell2cell ReadTheDocs API Reference
#62
IsaacUtah1379
opened
2 months ago
1
Clarification of handling multiple samples in cell2cell
#61
georginaalbadri
opened
3 months ago
1
can't run bash -i setup_env.sh --conda --gpu --kernel (python 3.10); the env is incompatible in python 3.7 when installing liana-py liana-R pytorch cell2cell togather
#60
huiyijiangling
closed
3 months ago
2
inability to import cell2cell from within liana compatible environment
#59
whitneyt1
closed
3 months ago
11
c2c.analysis.run_tensor_cell2cell_pipeline
#58
Iammaai
closed
1 month ago
14
Too few dimensions in the tensor (issue)
#57
AtheerAS
opened
5 months ago
1
Conflict to install cell2cell
#56
Capiques
closed
3 months ago
2
TypeError: metaclass conflict with cell2cell in reticulate
#55
rbutleriii
opened
6 months ago
3
Problems with the tensor pipeline at the Tensor Factorization step
#54
ludicaa
closed
3 months ago
4
Example not working
#53
imerelli
opened
6 months ago
1
The way to address TypeError: Passing a set as an indexer is not supported. Use a list instead.
#52
Pangjing-Wu
opened
6 months ago
1
Spatial LIANA x cell2cell analysis in R
#51
Qirongmao97
closed
6 months ago
3
Reduced number of cell types in factorisation output
#50
georginaalbadri
opened
7 months ago
1
TypeError: Passing a set as an indexer is not supported. Use a list instead.
#49
Fanyu000
opened
7 months ago
5
`c2c.io.read_data.load_tensor` loads NoneType
#48
paupaiz
closed
6 months ago
2
Updated Spatial Example
#47
earmingol
closed
11 months ago
0
Merge pull request #45 from earmingol/master
#46
earmingol
closed
11 months ago
0
docs
#45
earmingol
closed
11 months ago
0
v0.7.3
#44
earmingol
closed
11 months ago
0
v0.7.2
#43
earmingol
closed
11 months ago
0
Quick rename of "moving windows" into "sliding windows"
#42
earmingol
closed
12 months ago
0
fixed readthedocs
#41
earmingol
closed
12 months ago
0
Merge pull request #39 from earmingol/new_version
#40
earmingol
closed
12 months ago
0
Added mkdocs-jupyter
#39
earmingol
closed
12 months ago
0
Merge pull request #37 from earmingol/new_version
#38
earmingol
closed
12 months ago
0
cell2cell v0.7.0
#37
earmingol
closed
12 months ago
0
Improve matplotlib-based code for compatibility with newer versions
#36
earmingol
closed
11 months ago
0
Liana_tensor_c2c: Error setting up conda environment with Basilisk, no module named scipy
#35
reneemoerkens
closed
6 months ago
2
c2c.tensor.InteractionTensor TypeError
#34
mabro7766
closed
1 year ago
2
OutOfMemoryError when running run_tensor_cell2cell_pipeline on GPU
#33
joseph-siefert
opened
1 year ago
3
Large number of significant interactions
#32
joan-yanqiong
opened
1 year ago
5
cell2cell v0.6.8
#31
earmingol
closed
1 year ago
0
Linking the single cell tutorial with new vertsion of cell2cell
#30
Sophon-0
closed
6 months ago
1
predicting on new data
#29
Sophon-0
closed
1 year ago
8
IndexError at permutation step
#28
joan-yanqiong
closed
1 year ago
7
Gene expression normalization
#27
joan-yanqiong
closed
1 year ago
2
Update new_version to v0.6.6
#26
earmingol
closed
1 year ago
0
Elbow Rank 1?
#25
inofechm
closed
1 year ago
5
Updates for v0.6.5
#24
earmingol
closed
1 year ago
0
Minor update to examples & docs
#23
earmingol
closed
1 year ago
0
extract LR pairs in each factor
#22
Wulin-Tan
closed
1 year ago
1
Updates for v0.6.4
#21
earmingol
closed
1 year ago
0
Quick rebase
#20
earmingol
closed
1 year ago
0
Legends not appearing in plot
#19
dnjst
closed
1 year ago
1
Updates for v0.6.3
#18
earmingol
closed
1 year ago
0
Updates for v0.6.2
#17
earmingol
closed
2 years ago
0
Choices of upper_rank and tf_type
#16
deepcompbio
closed
1 year ago
6
Updates for v0.6.1
#15
earmingol
closed
2 years ago
0
Importance of sorting contexts
#14
deepcompbio
closed
2 years ago
2
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