Open oolonek opened 4 months ago
For now we have :
a robocopy script mirroring MS .raw file from the MS computer to a network drive (https://github.com/mapp-metabolomics-unit/ms-files-mirroring/blob/main/src/backup.ps1) This script is launched through Windows TaskScheduler.
a bash script launching Proteowizzard msconvert in a Docker (https://github.com/mapp-metabolomics-unit/msconvert-launcher/blob/main/src/launcher.sh) This second script is launched via a cronjob */1 * * * * /git_repos/msconvert-launcher/src/launcher.sh
*/1 * * * * /git_repos/msconvert-launcher/src/launcher.sh
Peek in https://github.com/compomics/ThermoRawFileParser (however this will handle only Thermo generated MS files) and Proteowizzard Native Linux scripts (https://github.com/ProteoWizard/pwiz)
For now we have :
a robocopy script mirroring MS .raw file from the MS computer to a network drive (https://github.com/mapp-metabolomics-unit/ms-files-mirroring/blob/main/src/backup.ps1) This script is launched through Windows TaskScheduler.
a bash script launching Proteowizzard msconvert in a Docker (https://github.com/mapp-metabolomics-unit/msconvert-launcher/blob/main/src/launcher.sh) This second script is launched via a cronjob
*/1 * * * * /git_repos/msconvert-launcher/src/launcher.shPeek in https://github.com/compomics/ThermoRawFileParser (however this will handle only Thermo generated MS files) and Proteowizzard Native Linux scripts (https://github.com/ProteoWizard/pwiz)