Open kjwinfield opened 8 months ago
In new genepanels includes all those indications this won't be needed in batch.
some work started on this here for future me to remember: https://github.com/eastgenomics/eggd_dias_batch/tree/v3.1.0-improve_test_code_handling
Currently samples are booked in Epic with both the SNV and CNV clinical indications. To allow eggd_dias_batch to correctly set off reports, the CNV indications need to be stripped off.
This command is run manually on Epic manifests before running eggd_dias_batch
It would be good if eggd_dias_batch could do this automatically Note: new test directory might make this no longer needed?