Handle non-VEP annotated VCFs - Githubissues

eastgenomics / eggd_generate_variant_workbook

DNAnexus app for generating xlsx variant workbooks

3 stars 0 forks source link

Handle non-VEP annotated VCFs #138

Closed jethror1 closed 5 months ago

jethror1 commented 1 year ago

Should test for VEP having been used or not and if the annotation has previously been split with split-vep here: https://github.com/eastgenomics/eggd_generate_variant_workbook/blob/f596e57f56bbe811154fe9b2ab4335863b144968/resources/home/dnanexus/generate_workbook/utils/vcf.py#L186