eastgenomics / eggd_generate_variant_workbook

DNAnexus app for generating xlsx variant workbooks
3 stars 0 forks source link

Handle VCFs as additional files #139

Open jethror1 opened 1 year ago

jethror1 commented 1 year ago

Can already handle delimited files in addition to the main vcf here: https://github.com/eastgenomics/eggd_generate_variant_workbook/blob/f596e57f56bbe811154fe9b2ab4335863b144968/resources/home/dnanexus/generate_workbook/utils/vcf.py#L318

Could add in ability to pass other vcfs in and do the minimum processing of splitting out fields but not filtering etc