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eastgenomics / eggd_generate_variant_workbook

DNAnexus app for generating xlsx variant workbooks
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Parse CombinedVariantOutput #140

Closed jethror1 closed 1 year ago

jethror1 commented 1 year ago

Add in functionality to parse out TMB, MSI and Amplifications section from TSO500 CombinedVariantOutput.tsv files if passed to -iadditional_files

Example job: https://platform.dnanexus.com/projects/GX1K52Q4KK64pp0x709gj2Qy/monitor/job/GX1KGXj4KK68B4J5pzjGk3Gz

Output sheet: image

This change is Reviewable