Passing an array of VCFs and filter breaks - Githubissues

eastgenomics / eggd_generate_variant_workbook

DNAnexus app for generating xlsx variant workbooks

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Passing an array of VCFs and filter breaks #141

Open jethror1 opened 1 year ago

jethror1 commented 1 year ago

Given an array of vcfs as input and a bcftools filter string, the app breaks due to filtering twice, and generating an invalid filter string here: https://github.com/eastgenomics/eggd_generate_variant_workbook/blob/f596e57f56bbe811154fe9b2ab4335863b144968/resources/home/dnanexus/generate_workbook/utils/filters.py#L58