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eastgenomics / eggd_generate_variant_workbook

DNAnexus app for generating xlsx variant workbooks
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Reads QC missing from summary sheet #2

Closed mattgarner closed 4 years ago

mattgarner commented 4 years ago

Need to update to extract this from output files in rather than database as previously, since database is not accessible from DNAnexus

Yu-jinKim commented 4 years ago

Add flagstat file in the inputs to extract total nb of reads and nb aligned

Yu-jinKim commented 4 years ago

Fixed in https://github.com/eastgenomics/eggd_vcf2xls_nirvana/commit/9aa7276844840acaf17496cb2bbcae9add29d533