Add HGMD, gnomAD, ClinVar annotation to the reports

eastgenomics / eggd_generate_variant_workbook

DNAnexus app for generating xlsx variant workbooks

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Add HGMD, gnomAD, ClinVar annotation to the reports #35

Closed Yu-jinKim closed 2 years ago

Yu-jinKim commented 4 years ago

Kate requested these annotations to be added to the reports. The eggd_vcf_annotator app will annotate the vcfs with the appropriate fields, vcf2xls will need to get those fields and add them to the reports.

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Yu-jinKim commented 4 years ago

Since the fields aren't known beforehand, my solution for that would be to read the header of the vcf file and get every field after "SOR" which seems to be the latest in every annotated vcf I checked

Yu-jinKim commented 2 years ago

Kinda implemented in #58