We handle the sample name in the bash script so that the sample id is "normal" (just the X number). But the vcf2xls script uses the annotated vcf to get the sample name which is a no-no and make the script fail when it's looking for the sample in the manifest --> dias reports fails but reanalysis works
https://platform.dnanexus.com/projects/G50vqjj4042QvYYf4kbp8QvZ/monitor/job/G56pBPj4042bFp2z4YGk1QpZ
We handle the sample name in the bash script so that the sample id is "normal" (just the X number). But the vcf2xls script uses the annotated vcf to get the sample name which is a no-no and make the script fail when it's looking for the sample in the manifest --> dias reports fails but reanalysis works