bug fixes, improvements

[jethror1]

• use bcftools isec to identify excluded variants to write to xlsx
• improvements to summary sheet formatting
• fix issue in app code for getting job/workflow IDs to record
• fix fun bug with issues using quotes in app for passing in filter strings

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This change is 

[pep8speaks]

Hello @jethror1! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file resources/home/dnanexus/generate_workbook/utils/excel.py:

Line 140:80: E501 line too long (80 > 79 characters) Line 141:80: E501 line too long (84 > 79 characters) Line 142:80: E501 line too long (84 > 79 characters)

• In the file resources/home/dnanexus/generate_workbook/utils/filters.py:

Line 72:5: E303 too many blank lines (2) Line 72:80: E501 line too long (82 > 79 characters) Line 97:80: E501 line too long (83 > 79 characters) Line 98:80: E501 line too long (85 > 79 characters) Line 100:80: E501 line too long (80 > 79 characters) Line 103:80: E501 line too long (83 > 79 characters) Line 109:80: E501 line too long (83 > 79 characters) Line 118:80: E501 line too long (85 > 79 characters)

Comment last updated at 2022-04-04 14:11:58 UTC