search

eastgenomics / gene_annotation2bed

MIT License
1 stars 0 forks source link

Removing unmapped contigs #11

Closed RSWilson1 closed 3 months ago

RSWilson1 commented 3 months ago

Fixes error creating IGV reports

Removed entries in BED with contigs which don't map to chromosome. i.e. NT ow NW prefixed contigs see: https://hgvs-nomenclature.org/stable/background/refseq/.

This change is Reviewable

pep8speaks commented 3 months ago

Hello @RSWilson1! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

Line 854:80: E501 line too long (95 > 79 characters) Line 858:80: E501 line too long (88 > 79 characters) Line 859:80: E501 line too long (92 > 79 characters)

Comment last updated at 2024-08-02 13:22:51 UTC