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eastgenomics / rd_wgs_workbooks_monitoring

Monitor progrees of RD WGS workbooks generation
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Initial commit #1

Closed kjwinfield closed 5 months ago

kjwinfield commented 5 months ago

This monitors a DNAnexus project where eggd_generate_rd_wgs_workbook jobs have run and checks to see that for a given input JSON file ID, an eggd_generate_rd_wgs_workbook job has been run with that file ID as an input and an output .xlsx report has been generated

It also contains a check that a given GEL WGS JSON has the correct GEL family ID inside it.

the dx_login and find_jobs are (mostly) copied from eggd_conductor_monitor as the same functionality is needed here.

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