Unittesting - part 1

[Yu-jinKim]

• Renamed the test script (which is why it's a whole new file)
• Make L002 fastqc data optional in the Fastqc table

List of tests:

• Check if the content gathered for the MultiQC object is appropriate depending on the assay
• Check if the MultiQC object is importable
  • It is already in the db
  • It is not in the db
  • The assay key has been deleted
• Check if the assay key is in the config assay
• Check if the fastqc data has been imported correctly

root@9a487de7928c:/app# python trendyqc/manage.py test trend_monitoring.tests
Found 7 test(s).
Creating test database for alias 'default'...
System check identified no issues (0 silenced).
DNAnexus login successful
.......
----------------------------------------------------------------------
Ran 7 tests in 91.128s

OK
Destroying test database for alias 'default'...

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This change is 

[pep8speaks]

Hello @Yu-jinKim! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file trendyqc/trend_monitoring/models/fastq_qc.py:

Line 7:80: E501 line too long (141 > 79 characters) Line 8:80: E501 line too long (141 > 79 characters)

• In the file trendyqc/trend_monitoring/tests/test_multiqc.py:

Line 39:80: E501 line too long (88 > 79 characters) Line 51:80: E501 line too long (82 > 79 characters) Line 62:80: E501 line too long (83 > 79 characters) Line 103:80: E501 line too long (84 > 79 characters) Line 131:39: W291 trailing whitespace Line 147:12: W291 trailing whitespace Line 149:80: E501 line too long (93 > 79 characters) Line 177:80: E501 line too long (93 > 79 characters) Line 201:35: W291 trailing whitespace Line 293:80: E501 line too long (83 > 79 characters) Line 300:80: E501 line too long (101 > 79 characters) Line 329:80: E501 line too long (88 > 79 characters)

Comment last updated at 2024-02-20 09:55:38 UTC