In 644 fix plotting following lane changes

[Yu-jinKim]

Closes #92 Closes #94

Backend

• get_data_for_plotting:
  • make the gathering of data dynamic i.e. if multiple lanes, check absence of data for each lane
• get_metric_filter:
  • build the filter as soon as read_data aka fastqc or base_distribution is detected for lane purposes
• format_data_for_plotly_js:
  • remove median trace
  • create boxes for the first and second lanes if needed
  • setup traces to be further divided by month
• NEW create_trace:
  • allows fine tuning of trace creation via kwargs
• NEW get_date_from_project_name:
  • given the project name extract the date to format it for the xaxis
• NEW calculate_mean_across_columns:
  • allows computation of mean across columns given a pandas series (used in conjunction of apply)

    Models

• fix error field names for base_distribution

  Template

• plot:
  • add dividers to xaxis to display month and year
  • show lines for x/y axes
  • boxmode thingy for no overlap when having multiple boxes for one tick

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This change is 

[pep8speaks]

Hello @Yu-jinKim! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file trendyqc/trend_monitoring/backend_utils/plot.py:

Line 187:80: E501 line too long (83 > 79 characters) Line 194:80: E501 line too long (81 > 79 characters) Line 311:80: E501 line too long (155 > 79 characters) Line 313:80: E501 line too long (155 > 79 characters) Line 314:80: E501 line too long (155 > 79 characters) Line 315:80: E501 line too long (155 > 79 characters) Line 316:80: E501 line too long (155 > 79 characters) Line 440:80: E501 line too long (87 > 79 characters)

• In the file trendyqc/trend_monitoring/views.py:

Line 320:80: E501 line too long (84 > 79 characters)

Comment last updated at 2024-06-17 15:31:41 UTC

[Yu-jinKim]

Coloring by group (assay sequencer id)

[Yu-jinKim]

Coloring by sequencer id

[Yu-jinKim]

Grouping by assay

[Yu-jinKim]

Couldn't actually trigger the error message because i can cover all possible groups with the amount of colors i have right now. Will check when i do the unittesting