prokka uses tbl2asn, but apparently it expires every year

[hajgato]

No idea how can we solve this from eb-side, we might have to reinstall prokka on a regular basis or manually download newer version of tbl2asn.

[hajgato]

/software/prokka/1.14.5-gompi-2020b/bin/../binaries/linux/tbl2asn
[tbl2asn] This copy of tbl2asn is more than a year old.  Please download the current version.
[tbl2asn] You must supply either an input file (-i) or an input directory (-p).
Use -p . to specify the current directory.

Hit Return

[jfgrimm]

as far as I am aware, the latest version available for download doesn't seem to expire any more (or they changed the message text):

$ strings tbl2asn.old | grep "Please download the current version."
This copy of tbl2asn is more than a year old.  Please download the current version.
$ strings tbl2asn | grep "Please download the current version."
$

[verdurin]

I've submitted a PR for the latest tbl2asn - not tested yet whether the expiration "feature" has disappeared.

18374

[jfgrimm]

@verdurin still looks good:

$ strings $EBROOTTBL2ASN/bin/tbl2asn | grep -i "download"
<img border=0 height=16 width=16 src="/blast/images/D.gif" alt="Download subject sequence spanning the HSP"></a>
$