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easybuilders / easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
https://easybuild.io
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Problem installing GCC version 13 with EasyBuild using Slurm #19544

Open AnDreW-21 opened 9 months ago

AnDreW-21 commented 9 months ago

Description:

I am attempting to install GCC version 13 using EasyBuild with Slurm as the job manager. However, I am encountering the following error:

ERROR

EasyBuild crashed with an error (at easybuild/software/EasyBuild/4.8.2/lib/python3.6/site-packages/easybuil/base/exceptions.py:126 in init)

configure: error: cannot run C compiled programs.

I try to install it using the following command:

eb GCC-13.2.0.eb --job --job-cores 8 --tmp-logdir $HOME/eb_tmplogs

Environment:

  1. EasyBuild Version: 4.8.2
  2. GCC Version: 8.5.0
  3. Slurm Version: 23.11.1

Additional Information:

config.log

cc version 8.5.0 20210514 (Red Hat 8.5.0-18) (GCC)
configure:4407: $? = 0
configure:4396: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:4407: $? = 1
configure:4396: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
gcc: fatal error: no input files
compilation terminated.
configure:4407: $? = 1
configure:4427: checking whether the C compiler works
configure:4449: gcc    conftest.c  >&5
configure:4453: $? = 0
configure:4501: result: yes
configure:4504: checking for C compiler default output file name
configure:4506: result: a.out
configure:4512: checking for suffix of executables
configure:4519: gcc -o conftest    conftest.c  >&5
configure:4523: $? = 0
configure:4545: result:
configure:4567: checking whether we are cross compiling
configure:4575: gcc -o conftest    conftest.c  >&5
conftest.c:9:10: fatal error: stdio.h: No such file or directory
 #include <stdio.h>
          ^~~~~~~~~
compilation terminated.
configure:4579: $? = 1
configure:4586: ./conftest
../configure: line 4588: ./conftest: No such file or directory
configure:4590: $? = 127
configure:4597: error: in "/GCCcore/13.2.0/system-system/gcc-13.2.0/stage1_obj':
configure:4599: error: cannot run C compiled programs.
If you meant to cross compile, use `--host'.
Micket commented 6 months ago

This looks like your OS compiler doesn't have stdio.h? I strongly believe you simply are missing glibc-headers, without which you won't be able to bootstrap the compilers