{bio}[GCCcore/12.2.0] NanoCaller v3.6.0, WFA2 v2.3.4, vcflib v1.0.9, ... w/ R 4.2.2

[verdurin]

(created using eb --new-pr)

Apologies for the number of easyconfigs - thought it would overall be less work than lots of PRs, given they're mostly simple backports.

[verdurin]

Test report by @verdurin SUCCESS Build succeeded for 10 out of 10 (10 easyconfigs in total) easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8 See https://gist.github.com/verdurin/1739ec3573d46f5b17551d97978b9fab for a full test report.

[smoors]

@boegelbot: please test @ generoso

[boegelbot]

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=20821 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20821 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

  Submitted batch job 13739

Test results coming soon (I hope)...

*- notification for comment with ID 2167840020 processed* *Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).*

[boegelbot]

Test report by @boegelbot SUCCESS Build succeeded for 11 out of 11 (11 easyconfigs in total) cns3 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8 See https://gist.github.com/boegelbot/7d04b9301f828293ff5197b768affee4 for a full test report.

[smoors]

@boegelbot please test @ jsc-zen3

[boegelbot]

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20821 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20821 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

  Submitted batch job 4384

Test results coming soon (I hope)...

*- notification for comment with ID 2167865230 processed* *Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).*

[boegelbot]

Test report by @boegelbot FAILED Build succeeded for 9 out of 11 (11 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18 See https://gist.github.com/boegelbot/72746839ccf6e94ce5d15a8cb2cbdd74 for a full test report.

EDIT: failed to load the LERC dep module, manually installing it in jsc-zen3 here: https://github.com/easybuilders/easybuild-easyconfigs/pull/19386

EDIT2: done, let's try again

[smoors]

@boegelbot please test @ jsc-zen3

[boegelbot]

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20821 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20821 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

  Submitted batch job 4387

Test results coming soon (I hope)...

*- notification for comment with ID 2167921091 processed* *Message to humans: this is just bookkeeping information for me, it is of no use to you (unless you think I have a bug, which I don't).*

[boegelbot]

Test report by @boegelbot SUCCESS Build succeeded for 11 out of 11 (11 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18 See https://gist.github.com/boegelbot/a4196d3279182aad381bb111fa0a4fcc for a full test report.

[smoors]

Going in, thanks @verdurin!