Build all of EPD (Enthought Python Distribution) from source

[JensTimmerman]

• [ ] appinst 2.1.2 OS abstraction for installing application menus, links and icons
• [ ] apptools 4.1.0 application building block technologies
• [x] basemap 1.0.2 plots data on map projections with matplotlib
• [ ] biopython 1.59 tools for biological computation
• [ ] bitarray 0.8.0 efficient representation of arrays of booleans
• [ ] blist 1.3.4 list-like type with better asymptotic performance
• [ ] blockcanvas 4.0.1 visual environment for creating simulation experiments
• [ ] bsdiff4 1.1.1 binary diff and patch using the BSDIFF4-format
• [ ] casuarius 1.0 python-wrap of Cassowary linear constraint solver
• [ ] chaco 4.2.0 interactive 2D plotting
• [ ] cloud 2.4.6 access to PiCloud's cloud-computing platform
• [ ] codetools 4.0.0 code analysis and execution tools
• [ ] configobj 4.7.2 simple but powerful configuration file reader and writer
• [ ] coverage 3.5.2 Code coverage measurement for Python
• [x] curl 7.25.0 transferring data specified with URL syntax (C library, OSX and Linux only)
• [ ] Cython 0.16 language for writing C extensions for Python
• [x] distribute 0.6.26 download, build, install, upgrade, and uninstall Python packages
• [ ] docutils 0.8.1 Documentation Utilities
• [ ] enable 4.2.0 low-level drawing and interaction
• [ ] enaml 0.2.0 language for building dynamic user interfaces
• [ ] encore 0.2 low-level core modules for building applications
• [ ] enstaller 4.5.6 managing and install tool for egg distributions
• [ ] envisage 4.2.0 Extensible Application Framework
• [ ] epydoc 3.0.1 generates API documentation for Python modules from docstrings
• [ ] ets 4.2.0 components to construct custom scientific applications
• [ ] etsdevtools 4.0.0 tools to support Python development
• [ ] etsproxy 0.1.1 proxy modules for backwards compatibility
• [ ] feedparser 5.1.1 handles RSS and Atom feeds
• [ ] foolscap 0.6.3 new version of Twisted's native RPC protocol
• [x] freetype 2.4.4 high-quality portable font engine
• [ ] fwrap 0.1.1 Tool to wrap Fortran 77/90/95 code in C, Cython and Python
• [x] GDAL 1.8.1 Geospatial Data Abstraction Library
• [ ] graphcanvas 4.0.0 Interactive Graph (network) Visualization
• [ ] grin 1.2.1 searches directories of source code better than grep or find
• [x] h5py 2.0.0 Python interface to the HDF library
• [x] hdf5 1.8.9 general purpose file format library for scientific data
• [ ] html5lib 0.95 HTML parser designed to follow the WHATWG HTML5 specification
• [ ] idle 2.7.3 interactive Python shell
• [ ] ipython 0.13.1 advanced shell for interactive and exploratory computing
• [ ] Jinja2 2.6 template engine
• [ ] jsonpickle 0.4.0 serializing any arbitrary object graph into JSON
• [ ] keyring 0.9.2 store and access your passwords safely
• [x] lib_netcdf4 4.2 NetCDF (network Common Data Form) library for array-oriented data
• [x] libgdal 1.8.1 Geospatial Data Abstraction Library
• [x] libjpeg 7.0 JPEG library
• [x] libpng 1.2.40 reference library for Portable Network Graphics
• [ ] libpython 1.2 mingw import library
• [x] libxml2 2.7.8 XML parser and toolkit
• [ ] libxslt 1.1.26 XSLT library with XPath support
• [ ] libYAML 0.1.4 YAML 1.1 parser and emitter (C library)
• [ ] lxml 2.3.4 XML/XSLT library with bindings to libxml2/libxslt
• [x] matplotlib 1.2.0 interactive 2D plotting library
• [ ] mayavi 4.2.0 interactive 3D visualization
• [x] MDP 3.2 Modular toolkit for Data Processing (MDP)
• [ ] mingw 4.5.2 native Windows port of GCC
• [x] MKL 10.3 Intel Math Kernel Library (runtime)
• [x] netCDF4 1.0 interact with in both the new netCDF 4 and 3 formats
• [ ] networkx 1.6 creating and manipulating graphs and networks
• [x] nose 1.1.2 extends the test loading and running features of unittest
• [ ] numexpr 2.0.1 fast evaluation of array expressions
• [x] numpy 1.6.1 general-purpose array-processing and math library
• [ ] openpyxl 1.5.8 reader and writer of Excel OpenXML files
• [x] pandas 0.10.0 data analysis library
• [x] paramiko 1.7.7.1 SSH2 protocol for secure connections to remote machines
• [ ] pep8 1.0.1 Python style guide checker
• [ ] PIL 1.1.7 image processing library
• [ ] ply 3.4 Python implementation of lex and yacc
• [ ] pyaudio 0.2.4 bindings for PortAudio
• [ ] Pycluster 1.50 clustering software for gene expression data analysis
• [ ] pycrypto 2.4.1 collection of cryptographic algorithms and protocols
• [ ] pydot 1.0.28 interface to Graphviz's Dot language
• [ ] pyface 4.2.0 GUI abstraction layer
• [ ] pyfits 3.0.6
• [ ] pyflakes 0.5.0 analyze Python programs and detect error
• [ ] pygarrayimage 0.0.7 allows NumPy arrays as source of texture
• [ ] pyglet 1.1.4 interface for developing visually-r
• [ ] Pygments 1.4 code syntax highlighting package written in Pytho
• [x] pyhdf 0.8.3 interface to the NCSA HDF4 library
• [ ] pyodbc 3.0.6 d
• [ ] PyOpenGL 3.0.1 python binding to OpenGL and related APIs
• [ ] pyOpenSSL 0.13
• [ ] pyparsing 1.5.6 module for creating parsers with a simple gra
• [ ] pyproj 1.9.0 cartographic transformations and geodetic computati
• [ ] pyserial 2.6 encapsulation the acces
• [ ] PySide 1.1.1 bindings for Qt
• [x] pytables 2.3.1 hierarchical
• [x] Python 2.7.3 general-purpose, high-level programming
• [ ] python_dateutil 1.5 extensions to the standard datetime module
• [ ] PythonDoc
• [ ] pytz 2011n world timezone definitions, modern and hi
• [ ] pywin32 214 Python extensions for Windows
• [x] PyYAML 3.10 YAML parser and emitter
• [ ] pyzmq 2.
• [ ] Qt 4.7.3 cross-platform application and UI framework
• [ ] Rep
• [x] scikit_learn 0.11 set of python modules for machine learning and data mining
• [ ] scikit
• [ ] scikits.timeseries 0.91.3 manipulating
• [ ] scimath 4.1.0 support for scientific
• [x] scipy 0.10.1 libraries for mathematics, science, and engin
• [ ] scite 1.74 Text editor based on Scintilla
• [ ] scons 2.0.1 Python
• [ ] Shapely 1.2.14 Geometric objects, predicates, and operations
• [ ] Si
• [ ] Sphinx 1.1.2 creates intelligent and beautiful
• [ ] SQLAlchemy 0.7.6 SQL toolkit and Object Relational Mapper
• [ ] statsmodels 0
• [ ] swig 1.3.40 C and C++ wrapper and interface generator
• [ ] sympy 0.7.1 library
• [ ] tornado 2.2 non-blocking web server
• [ ] traits 4.2.0 object attribut
• [ ] traitsui 4.2.0 traits-capable windowing framework
• [ ] Twi
• [x] VTK 5.6.0 3-D computer graphics, image processing
• [ ] wxPython 2.9.2.4 wrapper around the wxWidget
• [ ] xlrd 0.7.6 extract data from Microsoft Excel (tm)
• [ ] xlwt 0.7.4 create spreadsheet files compatible wi
• [x] zlib 1.2.6 cross-platform lossless data-compression library
• [ ] zope.inter

[fgeorgatos]

Hey guys,

About #119 & http://www.enthought.com/products/epdlibraries.php

Can you please clarify? does that mean that numpy now could support for MKL, right? Also interesting packages to consider, if not too much trouble: biopython h5py netCDF4 numexpr pep8 pyflakes pytables sympy pytables

Ref. for some: https://www.hpc.ntnu.no/display/hpc/Software & the open issue for PRACE support.

[JensTimmerman]

In #119 we just install the binary as provided by Enthought, (without MKL linkage in numpy/scipy)

This ticket is about building everything Enthought ships, and stop redistributing their binary instead. Since we can build a big part of whatever Enthought are delivering we should just compile them all from source with the right linkage (what we already do for numpy/scipy, we always link with the math libraries in the toolchain)

[fgeorgatos]

btw. let's add provisionally also ipython & mayavi, assuming they don't require much debugging effort...

[migueldiascosta]

both EPD and it's successor Canopy are gone, there's EDM but even just listing the packages seems to require a commercial subscription (tried with their docker image).

This issue as it is doesn't seem to make sense anymore, so closing