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Fix `check-test-warnings` workflow: "Global state has changed" in `test-report.brmsfit` #448

Open rempsyc opened 3 days ago

rempsyc commented 3 days ago

How to solve the "Global state has changed" warning in test-report.brmsfit? Would close #445

https://github.com/easystats/report/actions/runs/9797434007/job/27054023826?pr=447#step:5:196

── Warning (test-report.brmsfit.R:3:1): report.brms ────────────────────────────
Global state has changed:
     names(before[[4]])                | names(after[[4]])                      
[94] "PIPX_HOME"                       | "PIPX_HOME"                       [94] 
[95] "PKGCACHE_HTTP_VERSION"           | "PKGCACHE_HTTP_VERSION"           [95] 
[96] "PKGLOAD_PARENT_TEMPDIR"          | "PKGLOAD_PARENT_TEMPDIR"          [96] 
                                       - "PKG_CPPFLAGS"                    [97] 
                                       - "PKG_LIBS"                        [98] 
[97] "POWERSHELL_DISTRIBUTION_CHANNEL" | "POWERSHELL_DISTRIBUTION_CHANNEL" [99] 
[98] "PWD"                             | "PWD"                             [100]
[99] "RENV_CONFIG_REPOS_OVERRIDE"      | "RENV_CONFIG_REPOS_OVERRIDE"      [101]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
      names(before[[4]])        | names(after[[4]])              
[153] "TESTTHAT"                | "TESTTHAT"                [155]
[154] "TZ"                      | "TZ"                      [156]
[155] "USER"                    | "USER"                    [157]
                                - "USE_CXX17"               [158]
[156] "VCPKG_INSTALLATION_ROOT" | "VCPKG_INSTALLATION_ROOT" [159]
[157] "XDG_CONFIG_HOME"         | "XDG_CONFIG_HOME"         [160]
[158] "XDG_RUNTIME_DIR"         | "XDG_RUNTIME_DIR"         [161]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
before[[4]][94:99] vs after[[4]][94:101]
  PIPX_BIN_DIR"/opt/pipx_bin"
  PIPX_HOME"/opt/pipx"
  PKGCACHE_HTTP_VERSION"2"
  PKGLOAD_PARENT_TEMPDIR"/tmp/RtmpQHAqXH"
+ PKG_CPPFLAGS"  -I\"/home/runner/work/_temp/Library/Rcpp/include/\"  -I\"/home/runner/work/_temp/Library/RcppEigen/include/\"  -I\"/home/runner/work/_temp/Library/RcppEigen/include/unsupported\"  -I\"/home/runner/work/_temp/Library/BH/include\" -I\"/home/runner/work/_temp/Library/StanHeaders/include/src/\"  -I\"/home/runner/work/_temp/Library/StanHeaders/include/\"  -I\"/home/runner/work/_temp/Library/RcppParallel/include/\"  -I\"/home/runner/work/_temp/Library/rstan/include\" -DEIGEN_NO_DEBUG  -DBOOST_DISABLE_ASSERTS  -DBOOST_PENDING_INTEGER_LOG2_HPP  -DSTAN_THREADS  -DUSE_STANC3 -DSTRICT_R_HEADERS  -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION  -D_HAS_AUTO_PTR_ETC=0  -include '/home/runner/work/_temp/Library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp'  -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 "
+ PKG_LIBS" '/home/runner/work/_temp/Library/rstan/lib//libStanServices.a' -L'/home/runner/work/_temp/Library/StanHeaders/lib/' -lStanHeaders -L'/home/runner/work/_temp/Library/RcppParallel/lib/' -ltbb "
  POWERSHELL_DISTRIBUTION_CHANNEL"GitHub-Actions-ubuntu22"
  PWD"/home/runner/work/report/report"
  RENV_CONFIG_REPOS_OVERRIDE"https://packagemanager.posit.co/cran/__linux__/jammy/latest"
      before[[4]]              | after[[4]]                    
[153] "true"                   | "true"                   [155]
[154] "UTC"                    | "UTC"                    [156]
[155] "runner"                 | "runner"                 [157]
                               - "1"                      [158]
[156] "/usr/local/share/vcpkg" | "/usr/local/share/vcpkg" [159]
[157] "/home/runner/.config"   | "/home/runner/.config"   [160]
[158] "/run/user/1001"         | "/run/user/1001"         [161]
rempsyc commented 3 days ago

It seems this issue arises simply from calling the brms::brms() function. Just running the test with:

model <- suppressMessages(suppressWarnings(brms::brm(
    mpg ~ qsec + wt,data = mtcars, refresh = 0, iter = 1, seed = 333)))

Generates that "Global state has changed" warning. Any pointers here @IndrajeetPatil? Would you suggest opening an issue in the brms repo?