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ebecht / MCPcounter

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Getting Blank result #31

Open ShaktiprasadM opened 1 year ago

ShaktiprasadM commented 1 year ago

I am using TCGA-LGG data. I used the following code but getting blank output. I have saved genes and probesets under genes and probesets. MCPcounter.estimate(rna, featuresType = "ENSEMBL_ID", probesets = probesets, genes = genes)

ebecht commented 1 year ago

Hi,

Sorry I missed your post. In case it's not too late, for diagnosis could you print rownames(rna) and rna[1:5, 1:5] ?

Donbbit commented 1 week ago

I have the same issue, do you know how to solve it?

ebecht commented 1 week ago

Hi,

Sorry I missed your post. In case it's not too late, for diagnosis could you print rownames(rna) and rna[1:5, 1:5] ?

Start with this ?