ebecht / infinityFlow

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Able to separate the training from the imputation? #24

Open denvercal1234GitHub opened 1 year ago

denvercal1234GitHub commented 1 year ago

Hi there,

Thanks again for the tool.

Q1. I wonder if it is anyway possible or feasible to separate the training from the imputation instead of having both steps in 1 function infinity_flow()? This is because if we successfully train the models but then the system fails during imputing, then we necessarily start from scratch.

Q2. If the error below happened, does it mean I can still use the output FCS files just not the plots?

Thank you for your help.

Exporting results
    Transforming predictions back to a linear scale
    Exporting FCS files (1 per well)
Plotting
    Chopping off the top and bottom 0.005 quantiles
    Shuffling the order of cells (rows)
    Producing plot
Error: vector memory exhausted (limit reached?)
Error during wrapup: vector memory exhausted (limit reached?)
Error: no more error handlers available (recursive errors?); invoking 'abort' restart