Add random errors to data to test validation failures(regexp)

[snathanvj]

Currently most of the samples in our tests are valid samples. We want to test validation failures thoroughly as well. We will introduce one error per checklist data sample and see how it behaves. The errors should be introduced into the BioSamples documents. Later we will introduce multiple errors and check the error messages for correct and consistent behaviour.

Create a list with:

1. • checklist accession
2. • field that is invalidated
3. • error type from list below

For clarity see below:

• [x] invalid pattern regex - @ESapenaVentura

[ESapenaVentura]

• The script has been pushed to /nfs/production/tburdett/workstreams/fairification/checklists/generate_invalid_patterns.py (Will create PR soon)

• The script has been run with the following command:

  python3 generate_invalid_patterns.py -i data/run009/jsons/ -s checklist-converter/schema/ -o data/run008/invalid/invalid_pattern/ -e 2

  This generates ~2 errors per document (if possible) around patterns

• The script writes a report in a csv file that indicates: document_path,checklist,invalid_path,error_type

• Moved that report under ...data/run008/pattern_invalidation_error_report.csv

• After PR I'll work on error validation via biovalidator

[ESapenaVentura]

ebi-ait/checklist-converter#6