ebi-ait / hca-ebi-dev-team

Repository for hca ebi dev team agile management. See zenhub board
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Update publications for some submitted datasets #430

Open aaclan-ebi opened 3 years ago

aaclan-ebi commented 3 years ago

The following projects have their publicationsInfo field updated but the publications field in the metadata is still missing. We need to update them in Ingest and propagate to DCP &/or archives.

f83165c5-e2ea-4d15-a5cf-33f3550bffde 4a95101c-9ffc-4f30-a809-f04518a23803 41fb1734-a121-4616-95c7-3b732c9433c7

{
            "tracker_id": "dcp5662713031906261",
            "project_uuid": "f83165c5-e2ea-4d15-a5cf-33f3550bffde",
            "doi_in_tracker": "10.1038/s41586-018-0698-6",
            "pub_link_in_tracker": "https://www.nature.com/articles/s41586-018-0698-6",
            "has_publications_info": true
        },
        {
            "tracker_id": "dcp8015946366072732",
            "project_uuid": "74b6d569-3b11-42ef-b6b1-a0454522b4a0",
            "doi_in_tracker": null,
            "pub_link_in_tracker": "https://www.10xgenomics.com/blog/our-13-million-single-cell-dataset-is-ready-to-download",
            "has_publications_info": false
        },
        {
            "tracker_id": "dcp0601790832230307",
            "project_uuid": "4a95101c-9ffc-4f30-a809-f04518a23803",
            "doi_in_tracker": "10.1038/s41467-019-12464-3",
            "pub_link_in_tracker": "https://www.ncbi.nlm.nih.gov/pubmed/31624246",
            "has_publications_info": true
        },
        {
            "tracker_id": "dcp7904339928158536",
            "project_uuid": "41fb1734-a121-4616-95c7-3b732c9433c7",
            "doi_in_tracker": "10.1126/sciimmunol.aba9953",
            "pub_link_in_tracker": "https://doi.org/10.1126/sciimmunol.aba9953",
            "has_publications_info": true
        },
Wkt8 commented 3 years ago

@aaclan-ebi was this catalogue work that has been completed or is this still relevant??

aaclan-ebi commented 3 years ago

This is still relevant. These datasets were submitted to DCP/archives without publication info in project metadata. I believe we want to update them.

clairerye commented 3 years ago

I think we might be chasing our tails here a bit. The top one - project - f83165c5-e2ea-4d15-a5cf-33f3550bffde - shows in the data portal with the correct publication. https://data.humancellatlas.org/explore/projects/f83165c5-e2ea-4d15-a5cf-33f3550bffde. As far as I can see, its only the last one (41fb1734-a121-4616-95c7-3b732c9433c7) that is actually missing publication info in the browser

ofanobilbao commented 2 years ago

Note Updates: