GSE160048 - Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes

[ofanobilbao]

Project short name:

Patrakka-Human-Smartseq2

Primary Wrangler:

Wei

Secondary Wrangler:

Ida

Link to Ingest

https://contribute.data.humancellatlas.org/projects/detail?uuid=662157e4-ba53-4766-975a-ac11920f153e&tab=project

Associated files

• Google Drive:

Published study links

• Paper: Included data Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes

• Accessioned data: GSE160048

Key Events

• [x] Convert published metadata to HCA spreadsheet
• [x] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [x] Upload sheet to validate metadata
• [x] Transfer raw files to ingest to validate data files
• [x] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[Wkt8]

Note to Wei: check project tabs! add yourself as curator!

[Wkt8]

Emailed Dr Patrakka to ask about linking between the GEO samples and the analysis files - maybe an open question here about the efficacy of modelling Smart-Seq 2 in so many cells?

[ofanobilbao]

@Wkt8 to chase once more, and if no response close the ticket and mark it as stalled in ingest

[Wkt8]

Emailed again.