COPDIncreasesCovid19

[ofanobilbao]

Project short name:

COPDIncreasesCovid19

Primary Wrangler:

Secondary Wrangler:

Link to Ingest

https://contribute.data.humancellatlas.org/projects/detail?uuid=2c4647ba-c814-4158-8ea9-6889930e4dfe&tab=project

Associated files

• Google Drive:

Published study links

• Paper: Increased SARS-CoV-2 Infection, Protease, and Inflammatory Responses in Chronic Obstructive Pulmonary Disease Primary Bronchial Epithelial Cells Defined with Single-Cell RNA Sequencing

• Accessioned data: NA

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[ofanobilbao]

Where data lives I could not find. Wrangler will need to reach out to contributors

[idazucchi]

I've emailed the contributors to ask about the data, I'm moving onto a different dataset in the meantime

[ofanobilbao]

@idazucchi to chase once more and if no response close the ticket

[idazucchi]

I emailed the authors again, if I don't get a reply in one month I'll close this ticket