A Unique Cellular Organization of Human Distal Airways and Its Disarray in Chronic Obstructive Pulmonary Disease

[idazucchi]

Project short name:

tbd

Primary Wrangler:

Secondary Wrangler:

Associated files

• Google Drive: tbd

Published study links

• Paper: A Unique Cellular Organization of Human Distal Airways and Its Disarray in Chronic Obstructive Pulmonary Disease request to library services!

• Accessioned data:

• Ingest

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[idazucchi]

I've requested access to the published manuscript I've found a preprint but it's missing the data availability section - I'll send an email to request data after I've checked the published manuscript

[Wkt8]

Published manuscript locked behind a paywall - have requested via the EBI library service

[Wkt8]

I've checked this and there's still no note of the data availability or where it has been deposited. Next step to email authors.

[Wkt8]

Emailed.

[Wkt8]

Dear Wei Kheng,

Thanks for your email.

I will discuss this with our data analysis team who managed the data for this paper and get back to you.

Best wishes,

Renat