Myocyte-Specific Upregulation of ACE2 in Cardiovascular Disease

[anu-shiva]

Project short name:

Primary Wrangler: @anu-shiva

Secondary Wrangler:

Associated files

• Google Drive:

Published study links

• Paper

• Accessioned data: Single cell broad institute portal

Ingest

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[idazucchi]

@idazucchi check if there's enough metadata to wrangle

[idazucchi]

there have been 2 previous attempts to get more data/metadata (one, two) but no no reply came through

there is minimal donor metadata (id + disease) but the gene expression is only available for 3 genes

is it worth wrangling this?

[idazucchi]

@idazucchi to update ingest and close ticket