GSE205734 - LandscapeCardiacSarcoidosis

[idazucchi]

Project short name:

LandscapeCardiacSarcoidosis

Primary Wrangler:

Ida

Secondary Wrangler:

Associated files

• Google Drive: folder

Published study links

• Paper: Transcriptional and Immune Landscape of Cardiac Sarcoidosis

• Accessioned data: GSE205734

ingest

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[idazucchi]

Data reuse

this paper reusese data from another paper (Donor + NICM) - we should wrangle it separately GSE183852 --> added to the list under reused data section

Metadata linking

The supplementary data p14 includes a lot of donor metadata but no ids to match it up to the donors and data in GEO. This cannot be wrangled until we can get in touch with the authors to get clarity on the linking