GSE184749 - HumanToothEnamel

[idazucchi]

Project short name:

HumanToothEnamel

Primary Wrangler:

Ida

Secondary Wrangler:

Associated files

• Google Drive: folder

Published study links

• Paper: Single-cell census of human tooth development enables generation of human enamel

• Accessioned data: GSE184749

Ingest

Key Events

• [ ] Convert published metadata to HCA spreadsheet
• [ ] Manually curate dataset to meet HCA metadata standard
• [ ] Collect any matrix and cell-type annotation files
• [ ] Are the analysis files suitable for CellxGene? If something is missing get in touch with the authors to request it
• [ ] Upload sheet to validate metadata
• [ ] Transfer raw files to ingest to validate data files
• [ ] Check linking using ingest graph validator
• [ ] Ask the Secondary Wrangler for an end-to-end review of the project. Ask the Expertise Wrangler to review specific tabs if needed
• [ ] Submit dataset to Production
• [ ] Complete the Export SOP
• [ ] Convert project data to SCEA format following the SCEA conversion SOP if appropriate

[idazucchi]

The samples have been pooled by tissue type and developmental stage - see fig 1A and Supplementary fig 1 legend There is no accurate breakdown of how many samples were pooled together and their donors, so there isn't enough linking information to wrangle this dataset

Stalled until we are able to contact contributors

[idazucchi]

this is not on Dave's tracker nor on the ORCF list I'm removing the bionetwork tag and closing the ticket